Index

B

build_pdb_object() (in module topobuilder.utils)

builder (class in topobuilder.base_plugins.builder)

C

constraint_design() (in module topobuilder.utils)

corrector (class in topobuilder.base_plugins.corrector) createPDS() (in module topobuilder.utils)

F

FORM fragment_maker (class in topobuilder.base_plugins.fragment_maker)

funfoldes (class in topobuilder.base_plugins.funfoldes) funfoldes() (in module topobuilder.utils)

G

get_loop_length() (in module topobuilder.utils)

H

hybridize (class in topobuilder.base_plugins.hybridize)

hybridize() (in module topobuilder.utils)

I

imaster (class in topobuilder.base_plugins.imaster)

M

make_topologies (class in topobuilder.base_plugins.make_topologies) MASTER master_best_each() (in module topobuilder.utils)

master_fixedgap() (in module topobuilder.utils) master_groupedgap() (in module topobuilder.utils) master_nogap() (in module topobuilder.utils) motif_picker (class in topobuilder.base_plugins.motif_picker)

N

nomenclator (class in topobuilder.base_plugins.nomenclator)

P

pdb_geometry_from_rules() (in module topobuilder.utils) pds_database() (in module topobuilder.utils) plot_angle_network() (in module topobuilder.utils) plot_fragment_templates() (in module topobuilder.utils) plot_geometric_distributions() (in module topobuilder.utils) plot_loop_length_distribution() (in module topobuilder.utils) plot_match_bin() (in module topobuilder.utils) plotter (class in topobuilder.base_plugins.plotter)

plugin_bash() (in module topobuilder.utils) plugin_case_count() (in module topobuilder.utils) plugin_conditions() (in module topobuilder.utils) plugin_filemaker() (in module topobuilder.utils) plugin_filereader() (in module topobuilder.utils) plugin_imagemaker() (in module topobuilder.utils) plugin_title() (in module topobuilder.utils) plugin_warning() (in module topobuilder.utils)

R

rosettascript() (in module topobuilder.utils)

S

SKETCH statistics (class in topobuilder.base_plugins.statistics)

submit_nowait_slurm() (in module topobuilder.utils) submit_slurm() (in module topobuilder.utils)